People About ...
GoPubMed
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What is GoPubMed?
Stanford School of Medicine on FAQ
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Links to Bioinformatic Sites
Harvester crawls and crosslinks Karlsruhe Institute of Technology
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„
GoPubMed from Transinsight has inspired us because its interface really stands out from the multitude of scientific information systems. For us it's the perfect example of combining complex searches with a first class, easy-to-use interface. Despite comprehensive search possibilities Transinsight has managed to develop a user interface with meaningful Web technologies such as Ajax which not only provide a common base but also make it simple and user-friendly. ”
Malte Dreyer, Head of Research and Development, Max Planck Digital Library (July 30th, 2008)
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„
GoPubMed von Transinsight hat uns inspiriert, weil sein Interface aus der Masse an wissenschaftlichen Informationssystemen herausragt. Seine gelungene Verbindung zwischen komplexer Suche und einfachem, hochwertigem Interface ist für uns beispielhaft. Trotz der umfassenden Suchmöglichkeiten hat man es geschafft, mit sinnvoll eingesetzten Web-Technologien wie Ajax eine Benutzeroberfläche zu entwickeln, die sich auf einen einfachen Nenner bringen lässt und nebenbei auch noch freundlich und leicht wirkt. ”
Malte Dreyer, Head of Research and Development, Max Planck Digital Library (July 30th, 2008)
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The authors suggest the use of PubMed, Scopus, Google Scholar and HighWire Press - for better coverage, and GoPubMed - to view the hits categorized based on the MeSH and gene ontology terms.
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Nature Precedings How do you choose your literature search tool(s)? (July 24th, 2008)
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I am surgical resident at the University Clinic of Mannheim, Germany. I just discovered your machine and I am delighted!
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Florian Herrle (July 21th, 2008)
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BeWell@Stanford, an online community that aims to promote healthy living among the school's 30,000 students, faculty, and Stanford University staff.
BeWell@Stanford in a 360° view of Gopubmed (July 10th, 2008)
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Hot spots of intelligent search portals exist that utilize burgeoning forms of semantic technology - including Healia.com for consumer health and Gopubmed.com
for biomedical research. By offering a superior means of filtering vast arrays of information compared to their traditional counterparts, these websites present
a glimpse of what the Semantic Web might offer.
”
Medical News Today in E-Health 3.0: How Can The Semantic Web Change The World Of Internet Health Information? (June 13th, 2008)
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I like the design of the application, it feels very web 2.0. It takes some time to get used to it, but after a short learning period you start to enjoy it.
This feeling is even more reinforced when you get good search results and ideas how to use it creatively start popping to your mind.
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Ivor Kovic, M.D. on GoPubMed (June 8th, 2008)
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„
Im Jahr 2007 hat das Bundesinstitut für Risikobewertung (BfR) Fördermittel in Höhe von 400.000 Euro
für wissenschaftliche Erarbeitungen von Tierversuchsersatzmethoden bereitgestellt. Insgesamt 11 Anträge haben
im Begutachtungsverfahren die erforderliche Priorität für eine Förderung erreicht.
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Weltweit erste wissensbasierte Suchmaschine für alternativmethoden zu Tierversuchen ist online (May 26th, 2008)
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David Crotty, the Executive Editor of CSH Protocols on Web 2.0 for Biologists - Are any of the current tools worth using?
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„[...] One good example that already exists is GoPubMed, which combines PubMed searching with a folksonomy to streamline the process [...]”
David Crotty on Web 2.0 for Scientists: Where are the Applications?
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„
During my PhD work one of my colleagues, Dimitra Alexopoulou from TU-Dresden Biotechnology Centre, helped me sort topics of related scientific papers
in a novel semantic way. She introduced me to www.GoPubMed.org. Unlike other sites, which depend on some invisible ranking algorithms, GoPubMed allows
for the controlling of search results. I should say that I found a fantastic semantic search platform for reducing search time dramatically!
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Senem Simsek on ESTOOLS newsletter, issue 2 May 2008 (May 2nd, 2008)
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„
Playing around with gopubmed for the first time (I know, I know!) today. I put in my favorite search term,
„gastroesophageal reflux” and waited to see what happened. A lot of resulting information was
displayed, looking not like any search result screen I've ever seen. On the screen are the top authors on
the topic, top journals, publications on the topic over time, author collaboration network and a world map.
It's metadata heaven! The best part for me is the mesh root paths, showing all the trees in which my search
term shows up, and at what level. If I were just beginning a search and wasn't sure I had exactly the right
keyword, the root paths would be enormously helpful. I'm going to keep playing with this and see where it
leads.
Does anybody consistently use gopubmed.org instead of www.pubmed.gov? leave a comment if so and tell me why. ”Marie Kennedy on Organization Monkey: GoPubMed (May 14th, 2008)
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„Excellent Scientific Search Engine !!! Thanks.”
Julio Rosenstock, M.D. Dallas Diabetes and Endocrine Center
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„Thank you for this great tool. It has become my choice for literature retrieval.”
Jan Aerts - Roslin Institute, Edinburgh
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„J'imagine cette interface adaptée à un catalogue de bibliothèque...”
Jean-Charles Houpier on JC | Blog (March 14th, 2008)
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GoPubMed auf Flickr Fotos von Peter Morville (March 6th, 2008)
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„Congratulations for offering this valuable analyzing system. The most important problem of this system is that it misses papers indexed in Toxnet and Toxline, two important and valuable databases of Pubmed ... Good luck!”
Mohammad Abdollahi, Iranian Society of Toxicology
- „A visually enticing and very cool Web 2.0 application that enhances PubMed searching. Would you be interested in a web resource that harnesses the full power of PubMed but arranges and guides your search in some unusually helpful ways, something that gives searching a new pulse?”
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Alternative interface of the PubMed Hematopoiesis - Blood Stem Cell & Lineages (March 5th, 2008)
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„Congratulations. This looks 'wunderbarisch'.”
Murray Finkelstein, Health Studies Service, Ontario Ministry of Labour, Toronto, Canada
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Semantic thoughts bbgm (March 4th, 2008)
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Gopubmed.org: il motore di ricerca 2.0 che "pensa" B&G Comunicazion (February 29th, 2008)
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e-Second Opinions: 100 Search Engines and Tools for Medical Self-Diagnosis NOEDb Nursing Online Education Database (February 26th, 2008)
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headlines: URIs can be ambigous - democracy prevails! semantic weltbild 2.0 (February 28th, 2008)
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Another 10 great Web 2.0 tools for Diagnostic Imaging Professionals Indulge in the fascinating world of Radiology and Nuclear Medicine (February 9th, 2008)
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New Interface for PubMed Science at UCD Library Dublin, Ireland (February 1st, 2008)
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pubmed + folksonomy = gopubmed biogeekblog (February 1st, 2008)
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Recherche de littérature avec GoPubMed RECPUS (Januar 27th, 2008)
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GoPubMed paves the way for a migration from web to semantic web.Meetscience connecting knowledge! (January 13th, 2008)
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GoPubMed an interesting use of facets based on an ontology. infoneed (January 9th, 2008)
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„If all interfaces to biomedical databases were as good as this, we'd all be happier and more productive.”
nsaunders (January 7th, 2008)
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GoPubMed, nouvel outil de scientométrie NET - Suivi Laboratoire
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GoPubMed Peanutbutter (January 6th, 2008)
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„
GoPubMed is on the leading edge of accessible search tools for life sciences and biomedical work groups. Many corporations already possess robust semantic middleware
behind closed doors. GoPubMed attempts to give users a variety of data formats. Might we see these same components slightly renovated for other types of semantic tools?
Could it be that we may see the semantic web and natural language search grow more rapidly when the medical and corporate demands (knowledge "needers") lead the way?
”
jrotman on The Next big ... (October 18th, 2007)
- „When I took a look at GoPubMed.org, my first reaction was “Wow“! Transinsight tells you what happens when you mix PubMed with semantic web.”
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gopubmed: bringing pubmed and the semantic web together bbgm
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GoPubMed met à jour les réseaux sociaux de Medline. Blogue CISMeF
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GoPubMed, pour suivre l'état de la recherche sur le bégaiement. Parole de bègues
- „I played around a little bit and think it is really functional and fancy.”
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New research tool Competitive & Technical Intelligence Toolbox
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GoPubMed What, Who, Where and When Dr. Shock MD PhD (October 15th, 2007)
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PubMed in a Web2.0 dress, Gopubmed Dr. Shock MD PhD (August 28th, 2007)
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The name inspector - How names mean: Metaphors for web search (August 20th, 2007)
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PsychSplash: GoPubMed (August 12th, 2007)
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GoPubMed Alusión...Llamada Virtual (August 9th, 2007)
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32% not ”Made in the USA” AltSearchEngines (August 6th, 2007)
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GoPubMed GO! David Rothman (July 18th, 2007)
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MeshPubMed David Rothman (March 13th, 2007)
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„When I used for this for a few searches I found the results more useful and exactly what I was looking for and I am looking to use this more often. Seems like a good idea!!”
Sumer Sethi, Delhi, India on his blog
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„Congratulations, you have a beautiful and very useful page.”
Diego Rosselli, Bogota, Columbia
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„Excelent”
Dr. Arin Basu, University of California at Berkely, USA
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„Scientists need a solution to literature navigation not a learning curve. GoPubMed makes it simpler to find papers that I want to read.”
Dr. Christopher Baker, Institute For Infocomm Research, Singapore
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„GoPubMed is ingenious”
Dr. Urban Liebel, KIT Karlsruhe Institute of Technology, ITG - Institute of Toxicology and Genetics
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„Congratulations to a neat ontology-based search service!”
Dr. Otto Ritter, AstraZeneca Pharmaceuticals, Boston, USA
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„Great tool for fast and structured literature search. Makes the most out of PubMed.”
Dr. Friedrich Lottspeich, Max-Planck-Institut für Biochemie - Proteinanalytik
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„GoPubMed is fantastic the way it is - no doubt. Eg. I like the 'related categories' option or the possibility to add my own 'ontologies' - both are absolutely fantastic features complementing the basic features.”
Thomas Gutjahr, Scientific Information Manager at Actelion Pharmaceuticals Ltd
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„GoPubMed is very impressive and I can see great potential to our Biomedical researchers as well as clinicians.”
Ann Hulton, Emory University Head, Systems & media Services.
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„... interesting tool”
Soaring Bear, Ph.D. Pharmacology
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„Love this portal to PubMed.”
Scott VanCompernolle
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„Fantastic site. You have done an outstanding job. I will teach my residents about this tomorrow.”
Jim Mankin MD, Trauma Surgeon
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„What a great site! I work in Library search and I am full of admiration.”
John Hardy
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„
Here's an interesting new search engine that integrates gene ontology (Go) with PubMed and MESH terms.
More of us might be looking into genetic research, so it's a good resource to know about.
I really liked the left sidebar with MESH terms so that you can filter your results.
I was able to type in „costeosarcoma” (19,707 citations), then go to the MESH hierarchy and
click on organism, and then dog. That brought up 17 recent articles about osteosarcoma in dogs.
If you're not sure of a key word, this is a great way to browse.
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Allison Zwingenberger on her blog
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„Just a comment that I feel I need to give: I ”LOVE” the site, the idea, and the implementation. It's now my new favourite scientific search site.”
JP, anonymous internet user from Canada
Nature review | Genetics
February 2006
GoPubmed is mentioned amongst nine web-based applications for information retrieval for biological discovery - Literature mining for the biologist: from information retrieval to biological discovery.
Transinsight
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„At the EGM meeting in Capri in April 2007, Transinsight demonstrated a new knowledge-based search system. Transinsight's knowledge-based search technology is a major step towards intelligent searching which can dramatically reduce the time and effort needed to find desired literature. Knowledge-intense domains like oil and gas exploration can greatly benefit from this system. I see this as a very promising tool and will advise to our IT department to evaluate Transinsight's search technology. A possible test could be related to global exploration literature.”
Dr. Christine Fichtler, Statoil
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„GoPubMed helps Unilever quickly screen the vast literature for hidden gems and discover trends in science.”
Dr. Cecilia Eyre, Unilever
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„Elsevier is excited to explore the semantic frontier with our development partner Transinsight. With our content and their technology, we believe we can work to create a next-generation knowledge tool to support our editorial staff and benefit our users.”
Dr. Anita de Waard, Elsevier
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„TU Dresden has supported quite a number of successful spin-offs, which turn university know-how into products. Each new spin-off continues to please administrators and scientists alike. Good luck Transinsight.”
Hannes Lehmann, Head of Research Grants and Technology Transfer, TU Dresden
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„Das Wissenschaftsministerium sieht es mit großer Freude, wenn unterstützende Maßnahmen zur Firmengründung junger High-Tech Unternehmen in Dresden führen. Im Fall der Transinsight GmbH und ihrer grundlegend neuen wissensbasierten Suchtechnologien, sehen wir ein Unternehmen am Start, welches erhebliches wirtschaftliches Potential hat, welches letztendlich auf fundiertes wissenschaftliche Arbeiten zurückzuführen ist.”
Dr.-Ing. G. Uhlmann, Referatsleiter im Sächsischen Staatsministerium für Wissenschaft und Kunst
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„From the first moment on, I was convinced that Transinsight's idea would be successful. As the leader of large administration, I know how important and difficult it is to turn in-house documents into knowledge.”
Dr. Reinhard Behrens, private investor
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„The High-tech Gründer Fonds and its reviewers consider Transinsight's and TU Dresden's novel search technologies scientifically ground-breaking and economically very promising. Congratulations on a consistent and promising business plan.”
Esko Stahl, Senior Investment Manager, High-Tech Gründerfonds
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„Transinsight takes Google's idea of ranking pages according to their link structure to the next level. It does so by linking pages to background knowledge relevant to the life sciences and by structuring the results in a unique way. Thanks to Transinsight, searching is sorted.”
Mark Miller, Managing Partner CatCap GmbH
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